Atkinson, Gemma C., Kuzmenko, Anton, Chicherin, Ivan, Soosaar, Axel, Tenson, Tanel, Carr, Martin, Kamenski, Piotr and Hauryliuk, Vasili (2014) An evolutionary ratchet leading to loss of elongation factors in eukaryotes. BMC Evolutionary Biology, 14 (1). p. 35. ISSN 1471-2148
Baldauf, Sandra L., Romeralo, Maria and Carr, Martin (2013) The Evolutionary Origin of Animals and Fungi. In: Evolution from the Galapagos: Two Centuries after Darwin. Social and Ecological Interactions in the Galapagos Islands, 2 . Springer, pp. 73-106. ISBN 9781461467328
Carr, Martin, Richter, Daniel J., Fozouni, Parinaz, Smith, Timothy J., Jeuck, Alexandra, Leadbeater, Barry S.C. and Nitsche, Frank (2017) A six-gene phylogeny provides new insights into choanoflagellate evolution. Molecular Phylogenetics and Evolution, 107. pp. 166-178. ISSN 10557903
Ceriaco, Luis M. P., Gutierrez, Eliecer E., Dubois, Alain and Carr, Martin (2016) Photography-based taxonomy is inadequate, unnecessary, and potentially harmful for biological sciences. Zootaxa, 4196 (3). pp. 435-445. ISSN 1175-5326
Carr, Martin (2015) Report of the 2015 British Society for Protist Biology Spring Meeting. European Journal of Protistology, 51 (5). pp. 507-508. ISSN 09324739
Carr, Martin and Suga, Hiroshi (2014) The holozoan Capsaspora owczarzaki possesses a diverse complement of active transposable element families. Genome Biology and Evolution. ISSN 1759-6653
Costa, Marta D, Pereira, Joana B, Pala, Maria, Fernandes, Veronica, Olivien, Anna, Achilli, Alessandro, Perego, Ugo A., Rychkov, Sergei, Naumova, Oksana, Hatina, Jiri, Woodward, Scott R., Eng, Ken Khong, Macaulay, Vincent, Carr, Martin, Soares, Pedro, Pereira, Luísa and Richards, Martin B. (2013) A substantial prehistoric European ancestry amongst Ashkenazi maternal lineages. Nature Communications, 4 (2543). ISSN 2041-1723
Carr, Martin, Bensasson, Douda and Bergman, Casey M. (2012) Evolutionary genomics of transposable elements in Saccharomyces cerevisiae. PLoS ONE, 7 (11). e50978. ISSN 1932-6203
Carr, Martin and Baldauf, Sandra L. (2011) The Protistan Origins of Animals and Fungi. In: Evolution of Fungi and Fungal-Like Organisms. Mycota (14). Springer, London, pp. 3-24. ISBN 978-3-642-19973-8
Carr, Martin, Mayhew, Peter and Young, J. Peter (2010) Phylogeny of bethylid wasps (Hymenoptera: Bethylidae) inferred from 28S and 16S rRNA genes. Insect Systematics and Evolution, 41 (1). pp. 55-73. ISSN 1399-560X
Carr, Martin, Leadbeater, Barry S.C. and Baldauf, Sandra L. (2010) Conserved Meiotic Genes Point to Sex in the Choanoflagellates. Journal of Eukaryotic Microbiology, 57 (1). pp. 56-62. ISSN 10665234
Carr, Martin, Leadbeater, Barry S.C., Hassan, R., Nelson, M. and Baldauf, Sandra L. (2008) Molecular phylogeny of choanoflagellates, the sister group to Metazoa. Proceedings of the National Academy of Sciences, 105 (43). pp. 16641-16646. ISSN 0027-8424
Carr, Martin, Nelson, Michaela, Leadbeater, Barry S.C. and Baldauf, Sandra L. (2008) Three Families of LTR Retrotransposons are Present in the Genome of the Choanoflagellate Monosiga brevicollis. Protist, 159 (4). pp. 579-590. ISSN 14344610
Carr, Martin (2008) Multiple subfamilies of mariner transposable elements are present in stalk-eyed flies (Diptera: Diopsidae). Genetica, 132 (2). pp. 113-122. ISSN 0016-6707
Carr, Martin, Cotton, Samuel, Rogers, David W., Pomiankowski, Andrew, Smith, Hazel and Fowler, Kevin (2006) Assigning sex to pre-adult stalk-eyed flies using genital disc morphology and X chromosome zygosity. BMC Developmental Biology, 6 (1). p. 29. ISSN 1471213X
Carr, Martin, Cotton, Samuel, Földvári, Mihály and Kotrba, Marion (2006) A description of a new species of Diasemopsis (Diptera, Diopsidae) from the Comoro Islands with morphological, molecular and allometric data. Zootaxa, 1211. ISSN 1175-5326
Carr, Martin, Hurley, Imogen, Fowler, Kevin, Pomiankowski, Andrew and Smith, Hazel K. (2005) Expression of defective proventriculus during head capsule development is conserved in Drosophila and stalk-eyed flies (Diopsidae). Development Genes and Evolution, 215 (8). pp. 402-409. ISSN 0949-944X
Carr, Martin, Soloway, Judith R., Robinson, Thelma E. and Brookfield, John F. (2002) Mechanisms regulating the copy numbers of six LTR retrotransposons in the genome of Drosophila melanogaster. Chromosoma, 110 (8). pp. 511-518. ISSN 0009-5915
Carr, Martin, Soloway, Judith R., Robinson, Thelma E. and Brookfield, John F. (2001) An Investigation of the Cause of Low Variability on the Fourth Chromosome of Drosophila melanogaster. Molecular Biology and Evolution, 18 (12). pp. 2260-2269. ISSN 0737-4038
Földvári, Mihály, Pomiankowski, Andrew, Cotton, Samuel and Carr, Martin (2007) A morphological and molecular description of a new Teleopsis species (Diptera: Diopsidae) from Thailand. Zootaxa, 1620. pp. 37-51. ISSN 1175-5326
Handke, Jessica, Procopio, Noemi, Buckley, Michael, van der Meer, Dieudonne, Williams, Graham, Carr, Martin and Williams, Anna (2017) Successive Bacterial Colonisation of Pork and its Implications for Forensic Investigations. Forensic Science International. ISSN 0379-0738
Jump, Alistair S., Carr, Martin, Ahrends, Antje and Marchant, Rob (2014) Genetic Divergence During Long-term Isolation in Highly Diverse Populations of Tropical Trees Across the Eastern Arc Mountains of Tanzania. Biotropica, 46 (5). pp. 565-574. ISSN 00063606
Kotrba, Marion, Balke, Michael and Carr, Martin (2010) The systematic position of Diopsina Curran, 1928 (Diptera: Diopsidae) inferred from DNA sequence data. Insect Systematicsand Evolution, 41 (3). pp. 295-302. ISSN 1399-560X
King, N., Young, S.L., Abedin, M., Carr, Martin and Leadbeater, Barry S.C. (2009) The Choanoflagellates: Heterotrophic Nanoflagellates and Sister Group of the Metazoa. In: Emerging Model Organisms: A Laboratory Manual. Cold Spring Harbor Laboratory Press, pp. 1-26. ISBN 978-087969826-3
Leadbeater, Barry S.C., Hassan, Ruhana, Nelson, Michaela, Carr, Martin and Baldauf, Sandra L. (2008) A new genus, Helgoeca gen. nov., for a nudiform choanoflagellate. European Journal of Protistology, 44 (3). pp. 227-237. ISSN 09324739
Mellars, Paul, Gori, Kevin C., Carr, Martin, Soares, Pedro A. and Richards, Martin B. (2013) Genetic and archaeological perspectives on the initial modern human colonization of southern Asia. Proceedings of the National Academy of Sciences, 110 (26). pp. 10699-10704. ISSN 0027-8424
Nitsche, Frank, Carr, Martin, Arndt, Hartmut and Leadbeater, Barry S.C. (2011) Higher Level Taxonomy and Molecular Phylogenetics of the Choanoflagellatea. Journal of Eukaryotic Microbiology, 58 (5). pp. 452-462. ISSN 10665234
Rogers, David W., Carr, Martin and Pomiankowski, Andrew (2003) Male genes: X-pelled or X-cluded? BioEssays, 25 (8). pp. 739-741. ISSN 0265-9247
Suga, Hiroshi, Chen, Zehua, de Mendoza, Alex, Sebé-Pedrós, Arnau, Brown, Matthew W., Kramer, Eric, Carr, Martin, Kerner, Pierre, Vervoort, Michel, Sánchez-Pons, Núria, Torruella, Guifré, Derelle, Romain, Manning, Gerard, Lang, B. Franz, Russ, Carsten, Haas, Brian J., Roger, Andrew J., Nusbaum, Chad and Ruiz-Trillo, Iñaki (2013) The Capsaspora genome reveals a complex unicellular prehistory of animals. Nature Communications, 4. pp. 1-9. ISSN 2041-1723
Warren, Alan et al. (2017) Beyond the “Code”: A Guide to the Description and Documentation of Biodiversity in Ciliated Protists (Alveolata, Ciliophora). Journal of Eukaryotic Microbiology, 64 (4). pp. 539-554. ISSN 10665234